Pterygoplichthys up close

Research in the German Lab: Ecological and nutritional physiology

Our primary research goal is to understand how organisms are specialized to use specific resources and the consequences of specialization to ecosystem fluxes.  Our research integrates isotopic, molecular, biochemical, and physiological approaches to gain insight into the nutritional physiology of a range of taxa from microbes to vertebrates.  By understanding the resource acquisition strategies of a range of organisms within a given ecosystem, we can better understand fluxes within that system.  Our longterm goal to use this information to make more informed management decisions.

Current Projects:

Evolution of dietary specialization in prickleback fishes
Digestive adaptations for herbivory
Digestion in seagrass-eating, juvenile bonnethead sharks
Resource acquisition strategies of detritivores and decomposers
Abalone susceptibility to withering syndrome

San Simeon
Field collection site:
San Simeon, CA
picture by M.H. Horn

Field collection site:
Rio Maranon, Peru
picture by A.S. Flecker

Evolution of dietary specialization in prickleback fishes
Using physiological genomics, transcriptomics, microbiome sequencing, enzyme biochemistry, tissue histology, and whole animal physiology, we are investigating what it takes to make a living on different diets. The family Stichaeidae features dietary diversity in sympatric species, convergent evolution of herbivory, sister taxa with different diets, and ontogenetic dietary shifts, making them a dream system in which to understand dietary specialization in vertebrates. This is the focus of Dr. German, postdoctoral fellow Dr. Joseph Heras, and PhD student Michelle Herrera. A parallel project using experimental evolution with Danio rerio is also underway.

A. purpurescens (carnivore) picture by M.H. Horn

C. violaceus (herbivore)
picture by M.H. Horn

Digestive adaptations for herbivory
In 1971, Nevo transplanted five breeding pairs of the insectivorous lizard Podarcis sicula from Pod Kopiste to Pod Mrcaru in the Croatian Adriatic.  36 years later, Herrel et al. (2008, PNAS) revealed that the transplanted lizards on Pod Mrcaru had become largely herbivorous.  The transplanted P. sicula were larger, had greater bite force, and perhaps most interesting, had developed valves in their large intestines typically only observed in highly derived herbivorous lizards (e.g., Iguanids, Agamids).  So, in just ~30 generations, P. sicula had developed morphological adaptations for consumption of a plant diet that we previously thought only evolved over longer time scales.  In collaboration with Anthony Herrel and Zoran Tadic, we received a NSF grant to investigate the digestive physiology of P. sicula from the two islets, and this forms the foundation of Beck Wehrle's dissertation research.  See Beck's page for more detail.       

P. sicula
P. sicula (from Pod Mrcara)
picture by B.A. Wehrle

Pod Kopiste
Pod Kopiste, with few plants
picture by D.P. German

Digestion in seagrass-eating, juvenile bonnethead sharks
Herbivorous sharks? Bonnethead sharks (Sphyrna tiburo) appear to consume a fair amount of seagrass as juveniles (up to 62% index of relative importance in some young-of-the-year; Bethea et al. 2007).  In collaboration with Yannis Papastamatiou (Florida International University) we have shown that these sharks have the capability to assimilate nutrients from seagrass (Jhaveri et al. 2015; Leigh et al. 2018).  This is Samantha Leigh's dissertation research, so see her page for more detail on this exciting project, including a microbiome project.

Sphyrna tiburo
(image from

Shark gut
S. tiburo with its gut.

Resource acquisition strategies of detritivores and decomposers
Detritivores and decomposers perform important ecosystem services in all ecosystems, yet, we understand very little about the resource acquisition strategies of either group and how this effects carbon and nutrient cycling on local and even global scales.  In aquatic systems, it appears that detritivorous fishes play an important role in organic matter processing and may facilitate the decomposition process (e.g., Taylor et al. 2006).  We argue this is because of the their preference for soluble nutrients, which causes them to have high intake of a dilute diet.  Conversely, decomposers efficiently digest compounds (e.g., cellulose) that the detritivores cannot digest.  These two strategies may work in concert to facilitate decomposition and nutrient cycling in aquatic systems.  By starting at the molecular level and scaling up to the organismal (for the fish) and community levels (for the microbes), we hope to elucidate the interactive effects of these organisms in decomposition and nutrient cycling.

Pterygoplichthys disjunctivus (detritivore)
Efficiently digests soluble compounds

Microbial decomposition rate declines with concentration for soluble compounds, like starch.

Abalone susceptibility to withering syndrome
Abalone are susceptible to a bacterial disease called "withering syndrome" (WS). WS is caused by a Rickettsiales-like organism (RLO) that infects the digestive tract of abalone and leads to starvation and death. The RLO has been documented in most abalone species, yet the disease state thus far has been restricted to a relatively small proportion of abalone species at environmentally relevant temperatures.  Temperature increases and temperature variability have been linked to disease expression, and thus, the goals of this work are to 1) generate a robust phylogeny for California abalone and map temperature tolerance on that tree to better understand why some species are more susceptible to WS (via temperature stress) than others; 2) determine the physiological processes in the host digestive tract that link RLO infection to WS. This is the dissertation work of Alyssa Frederick, so see her page for more detail.    

Haliotis fulgens, green abalone
picture by A.R. Braciszewski